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Entries Tagged as 'Software'

How to make a UK map for TrekBuddy

February 2nd, 2008 by James · 4 Comments

Sometimes you wish to use your GPS and data enabled mobile phone to navigate but either you do not have a data signal, or the map you require is not available through Google or BlackBerry maps. This short article will talk you through how to create a map to be used with TrekBuddy on your […]

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Tags: Software · Free · BlackBerry

How to install offline Maps on your BlackBerry using TrekBuddy 0.973

February 2nd, 2008 by James · 13 Comments

BlackBerry smartphones are handy for GPS navigation helped by the excellent BlackBerry and Google Maps applications. When you are out of range of a data signal both these applications are unable to continue to provide a map. With TrekBuddy you can use offline maps, from Google and elsewhere, record route speed and […]

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Tags: Software · Free · BlackBerry

TortoiseSVN and svn+ssh problems

May 15th, 2007 by Mark · 1 Comment

I’ve had problems with TortoiseSVN connecting to a subversion repository on Mac OS X where the connection would just hang when trying to browse or checkout a repository, or would fail with the error “Unable to write to standard output (stderr)”. I show you how to diagnose the problem, and solve it (in my case).

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Tags: Software · Free

Producing Spaghetti Plots using R

April 6th, 2007 by James · 7 Comments

If you wish to analyse longitudinal data sometimes it is helpful to plot each experimental subject’s data at each timepoint to get a feel for the patterns or trends. You can often learn more from this raw data than a boxplot or line graph of the means. I am a habitual SPSS user but […]

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Tags: Software · Open Source · Medical · R statistical computing · Graphics

Port forwarding with SSH/Putty

March 27th, 2007 by Mark · 2 Comments

I regularly exchange data between computers at University and home. To maintain security, I keep a firewall running on all machines, and “tunnel” through the firewall(s) using SSH - the secure shell. For example, I run a web server on my main machine for web application development, and do not wish this to be publicly […]

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Tags: Software · Open Source · Free

How to use JabRef (BibTeX) with Microsoft Word 2003

March 25th, 2007 by James · 103 Comments

JabRef is one of the best reference managers available and provides a realistic alternative to Endnote, as well as being open-source & free. Unfortunately most users are not aware that JabRef (or any other BibTeX based reference manager) can easily be integrated for use with Microsoft Word. In this guide I will show you […]

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Tags: Software · Free

Batch converting PDF to JPG/JPEG using free software

March 21st, 2007 by Mark · 5 Comments

It is often necessary to batch convert PDF documents and graphics into other formats. I explain how to do this using totally free software. Searching for PDF software using Google is fraught with difficulty — one ends up with endless links to commercial sites, who charge lots of money, mislead users into paying for software […]

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Tags: Software · Open Source · LaTeX · Free · Graphics

Dovecot IMAP server, Debian Linux and tcpd’s hosts.allow

March 17th, 2007 by Mark · No Comments

Running your own email server is great, but it must be secure against attacks from hackers and “script-kiddies”, idiots who scan networks looking for systems that advertise services and allow remote access. You can secure certain services on your linux-based machine, such as sshd and imapd using tcpd’s hosts.allow and hosts.deny functionality, to limit the […]

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Tags: Software · Open Source · Free · Linux

10 killer free apps for the Medical Research Student (Windows) 1/2

March 10th, 2007 by James · No Comments

Before you start out with your research project you need to be equipped with the tools required to help you keep notes, write papers and produce professional looking documents. In this 2 part article I will describe 10 of my favourite applications, most of which are open source, all are free.

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Tags: Research · Software · Open Source · Free

Editing blog posts with TextMate

February 27th, 2007 by Mark · No Comments

If you use TextMate on Mac OS X (and if you don’t I would thoroughly recommend you try it: it is by far the best editor I have ever used) and maintain a blog, then it is possible to create blog entries using TextMate.

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Tags: Software